Here is my code
var s = Snap("#mySVG");
var r = s.rect(0,0,100,200,20,20).attr({ stroke: '#FFFFFF', 'strokeWidth': 20, fill: 'red' });
var clip1 = s.rect(0,0,200,60).attr({ stroke: '#FFFFFF', 'strokeWidth': 1, fill: 'white' });
r.attr({ mask: clip1 });
The mask works as expected in IE 10 but not in Firefox 32 and Chrome 37.
What is wrong ?
EDIT After user13500 answer. I turned the problem around, started with a blank page and import all elements from my non working page. It appears that a base tag in the header prevent it to work under FF and Chrome. That's looks crazy to me as everything else but masks works, so it's not a script path problem.
<base href="http://127.0.0.1/mySiteDev/">
Yes, as commented by @Robert Longson, the masks url change with the base tag. You can reproduce the sample by plain HTML/SVG as:
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Snap base</title>
<style media="screen">
body {
background: #fff;
}
</style>
<base href="http://127.0.0.1/mySiteDev/">
</head>
<body>
<svg id="mySVG">
<defs>
<mask id="Si0fh161e4">
<rect x="0" y="0" width="200" height="60" stroke="#ffffff"
style="stroke-width: 1px;" fill="#ffffff">
</rect>
</mask>
</defs>
<rect x="0" y="0" width="100" height="200" rx="20" ry="20" stroke="#ffffff"
fill="#ff0000" style="stroke-width: 20px;" mask="url('#Si0fh161e4')">
<!-- Problem URL --^ -->
</rect>
</svg>
</body>
</html>
Here the url url('#Si0fh161e4')
uses http://127.0.0.1/mySiteDev/
, to correct it one have to include document. E.g.
mask="url('the_document.html#Si0fh161e4')"></rect>
or, the somewhat useless;
<base href="//127.0.0.1/mySiteDev/the_document.html">
<base href="the_document.html">
...
which defeats the usability
I have not found anything in the Snap documentation on setting base for URLs, but I'll look further.
Old answer:
Your code works fine here. Chrome 37, Firefox 32, Opera 12.
Result:

Sample snippet, (your code):
window.onload = function () {
var s = Snap("#mySVG");
var r = s.rect(0, 0, 100, 200, 20, 20).attr({
stroke : '#FFFFFF',
strokeWidth : 20,
fill : 'red'
});
var clip1 = s.rect(0, 0, 200, 60).attr({
stroke : '#FFFFFF',
strokeWidth : 1,
fill : 'white'
});
r.attr({
mask: clip1
});
};
<script src="//cdnjs.cloudflare.com/ajax/libs/snap.svg/0.3.0/snap.svg-min.js"></script>
<svg id="mySVG"></svg>